Imagine if wikipedia was a native app, what this vuln would have caused. I for one prefer using stuff in the browser where at least it's sandboxed. Also, there's nothing stopping you from disabling JS in your browser.
Have you never seen a native app's auto-update get hijacked by malware? It happened (yet again) last month [0]
Tons of native apps also have plugins or addons, which (surprise surprise) is just code downloaded from some central repo, and run with way less sandboxing than JS.